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Stream Ecology and Management

Course Syllabus

Course Overview: This course focuses on the integrative principles of stream and groundwater ecology as a means of exploring the natural history and ecology of flowing waters. Streams and rivers are a biophysical composite of channel, hyporheic and floodplain environments. The goal of the course will be to introduce students to: a) the physical, chemical, and biological organization of streams, b) current theories in stream, groundwater and watershed ecology, c) watershed perspectives for studying flowing waters and interpreting the effects of man's activities on streams and rivers, and d) lab and field skills for conducting stream research. The class will meet 3 times per week (MWF 9:30-10:20) w/lectures on Monday/Wednesday with student-led discussions of research papers, etc. on Friday.

Textbook & Readings: There will be two required textbooks:

Allan, J.D. 1995. Stream Ecology: structure and function of running waters. Chapman and Hall, London, UK. 388pp.

Hauer, F.R. and G.A. Lamberti. 1998. Methods in Stream Ecology. Academic Press, San Diego, CA. 674 pp.

Additional required readings will available through the CNR Copy Center (Rm 22).   Scientific papers used during literature review sessions will be readily available through the UI/WSU libraries. 

Field Studies: Field studies will be an integral part of the class. There will be three all-day field trips (Saturdays) during the first half of the semester.  Local field trips to the Clearwater & St. Joe Rivers will review watershed concepts, river and stream hydraulics, channel morphology and aquatic chemistry and invertebrate sampling protocols. Class presentations on significance of field studies will be scheduled for Friday, November 7th.

Literature Review Sessions: On Fridays, there will be student-led discussions of three research papers pertinent to lecture topics for that week. The student will be the primary discussion leader and prepare a short handout (1-2 pages), which identifies the paper’s strengths, weaknesses and important findings. Discussion leaders will rotate from week to week throughout the semester.

Exams: Two exams will be given during the semester. Each exam will focus largely on materials covered in class prior to the exam, though testing will be cumulative in nature. The format of these exams will be largely essay with some definitions and problem sets.

Evaluation Criteria: (Total Points for Semester = 500)
2 Exams (mid-term & final exam, 100 pts each)        - 200
Field studies & presentation of results                     - 150
Discussion of scientific papers/class participation     - 150

Grade Scale:
                            A -- 90-100%
                            B -- 80-89%
                            C -- 70-79%
                            D -- 60-69%

Expectations of Students:

Be prepared for class discussions; read assignments before lecture.
Diligently work to obtain a broad working knowledge of stream ecosystems and their management in forest & rangeland environments (headwaters to lowland alluvial valleys).
Actively participate in all class activities

Office Location/Hours:

CNR 103D, ph: 208-885-9712
Office hours will be by appt.
Email: braatne@uidaho.edu

Additional Reference Texts on Library Reserve:

Gilbert, J. et al. (eds). 1994. Ground-water ecology. Academic Press, NY.

Giller, P.S. and B. Malmqvist. 1998.  The Biology of Streams and Rivers. Oxford Press, NY.

Gordon, N.D., R.A. McMahon and B.L. Finlayson. 1992. Stream hydrology: an introduction for ecologists. John Wiley & Sons, Chichester, UK.

Jones, J.B. and P.J. Mulholland (eds). 2000. Streams and Ground Waters. Academic Press, NY. 

Leopold, L. B. 1994. A View of the River. Harvard University Press, Cambridge, MA. 

Mount, J.F. 1995. California Rivers and Streams. University of California Press, Berkeley, CA.

Naiman, R.J., R. Bilby (eds). 1998.River Ecology and Management. Springer-Verlag, NY.

Wohl, E.E. 2000.  Mountain Rivers. American Geophysical Union, Washington, DC.

Course Outline (Fall Semester 2003)
Date Topic ALLAN or Methods*
Aug. 25-29  No Class - assigned readings (Hynes 1975 & Ward et al. 2002) w/write-up (instructions emailed to the class)
Sept. 3 Course Intro/Logistics
Discussion of assigned readings (turn in 1 pg writeup of Hynes/Ward papers)
Sept. 5 NO CLASS ~ CNR faculty retreat
Sept. 6 St Joe/Marble/Hobo Ck field trip

Sept. 8   

Fluvial geomorphology and hydrology 1,1,2,6 
Sept. 10 Stream hydraulics/sediment transport    1,3,4,7
Sept. 12 Class discussion of Hall et al. 1992
Sept. 15 NO CLASS ~ Flathead River Studies 

Sept. 17

Surface:ground-water interactions 2,3,30
Sept. 19  Literature review/discussion
Sept. 20 Field studies/Upper Palouse River
Sept. 22 Stream Chemistry 2,3,8

Sept. 24

Autotrophy ~ periphyton  4,13,14
Sept. 26   Literature review/discussion
Sept. 29 Heterotrophy ~ organic matter 5,10,27

Oct. 1

Role of large woody debris 12,11,29
Oct. 3 Literature review/discussion
Oct. 4 Field studies ~ Palouse/Graves Meadow
Oct. 6   No Class ~ Process field data
Oct. 8 Nutrient dynamics 6,13,29
Oct. 10 Literature review/discussion
Oct. 10 Hand out - take-home midterm exam
Oct. 13 Trophic dynamics ~ invertebrates 6,16

Oct. 15

Trophic dynamics ~ vertebrates 6,18
Oct. 17 Literature review/discussion
Oct. 17 Turn in mid-term exam

Oct. 20

Trophic dynamics ~ stable isotopes  Readings

Oct. 22

Trophic dynamics ~ stable isotopes Readings

Oct. 24

Literature review/discussion

Oct. 27

Herbivory 8,19

Oct. 29

Herbivory 8,19
Oct. 31 Literature review/discussion
Nov. 3 Predation 7,20,22

Nov. 5

Competition 9,23,24

Nov. 7

Class presentations of field studies

Nov. 10

Class presentations (cont)

Nov. 12

Invertebrate drift 10
Nov. 14 Literature review session

Nov. 17

Community structure & dynamics 11

Nov. 19

Community structure & dynamics 11

Nov. 21

Literature review/discussion
Nov. 24-28 FALL RECESS - no classes

Dec. 1

Index of biotic integrity readings

Dec. 3

Ecology of flow-regulated rivers 14

Dec. 5

Literature review/discussion

Dec. 8

Ecology of flow-regulated rivers (cont) 14
Dec. 8 Hand-out final exam

Dec. 10

Potential responses to climate change readings
Dec. 12 No Class 

Dec. 15

Final exam (due  by 5:00 pm)
* Chapters in Hauer and Lamberti 1998 are intended to give you an introduction to the topic and field sampling protocols.